PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02501g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 68aa    MW: 7943.52 Da    PI: 10.6752
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02501g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.91.5e-091647536
                              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS
                    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaeva 36
                              +k  r   ++  +n++ KKA E+S+LC++e+a
  Peinf101Scf02501g00013.1 16 DKHSRDAALTHMQNTLCKKAMEISILCGIEIA 47
                              6778888999999*****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.367447IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-10547IPR002100Transcription factor, MADS-box
PfamPF003194.2E-61647IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MSFQMRKKID MRLTRDKHSR DAALTHMQNT LCKKAMEISI LCGIEIARPG IRQFYMVIQM  60
LNQLLTSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258